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Here we'll look in more detail at chunk options in Rmarkdown which control how code and the output of the code is evaluated and displayed. A full listing of chunk options can be found at the knitr website.

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We will discuss rmarkdown (also referred to as R Markdown) in a Chapter 4, and will now focus on discussing RStudio. 3.2 What is RStudio? RStudio is a powerful, free, open-source integrated development environment for R. Development on RStudio began in 2010, and the first beta was released in February 2011. It is available in two editions. R Markdown is a great tool to make research results reproducible. However, in scientific research papers or reports, tables and figures usually need to be numbered and referenced. Unfortunately, R Markdown has no “native.

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